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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpCHypothetical protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (356 aa)    
Predicted Functional Partners:
ugpE
Hypothetical protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
 0.990
CKO_04873
Hypothetical protein; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
  
  0.989
CKO_04874
Hypothetical protein; KEGG: eci:UTI89_C1581 4.0e-07 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component; Psort location: Periplasmic, score:10.00.
 
  
 0.981
CKO_04870
Hypothetical protein; KEGG: eci:UTI89_C3956 4.0e-121 ugpQ; glycerophosphodiester phosphodiesterase, cytosolic K01126; COG: COG0584 Glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score:9.97.
 
    0.830
CKO_03884
Hypothetical protein; KEGG: cya:CYA_1846 6.4e-09 modB; molybdate ABC transporter, permease protein K02018; COG: COG3833 ABC-type maltose transport systems, permease component; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.725
CKO_03883
Hypothetical protein; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score:9.86.
 
     0.721
atpD
Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.444
atpA
Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.429
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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