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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04896Hypothetical protein; COG: NOG09778 non supervised orthologous group. (120 aa)    
Predicted Functional Partners:
CKO_00755
Hypothetical protein; KEGG: stm:STM2082 2.0e-213 rfbP; LPS side chain defect: bifunctional enzyme: undecaprenol-phosphate galactosephosphotransferase, and O-antigen transfer K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.897
CKO_04191
Hypothetical protein; COG: COG4795 Type II secretory pathway, component PulJ; Psort location: Cytoplasmic, score:8.96.
  
     0.773
CKO_01638
Hypothetical protein; COG: NOG08686 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.50.
 
    0.746
tsgA
Hypothetical protein; KEGG: sso:SSO0328 0.0066 nuoL; NADH dehydrogenase I chain L, M K00341:K00342; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.735
secM
Hypothetical protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.723
CKO_04660
Hypothetical protein; KEGG: shn:Shewana3_3829 8.1e-18 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:9.82.
  
     0.722
CKO_00758
Hypothetical protein; KEGG: aci:ACIAD0068 4.3e-05 ptk; tyrosine-protein kinase, autophosphorylates K00903; COG: COG3765 Chain length determinant protein; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.720
CKO_01952
Hypothetical protein; COG: COG5633 Predicted periplasmic lipoprotein.
  
     0.699
CKO_02574
Hypothetical protein; KEGG: spt:SPA0750 0.0057 wzc; putative tyrosine-protein kinase K00903; COG: COG3765 Chain length determinant protein; Psort location: CytoplasmicMembrane, score:9.82.
 
     0.691
mdoC
Hypothetical protein; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane.
 
   
 0.679
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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