close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04993Hypothetical protein; KEGG: rha:RHA1_ro09047 1.5e-48 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00. (339 aa)    
Predicted Functional Partners:
CKO_04991
Hypothetical protein; KEGG: rru:Rru_A2359 7.3e-113 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K06020; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.997
CKO_04992
Hypothetical protein; KEGG: bpm:BURPS1710b_A0449 5.3e-05 glycine betaine/L-proline ABC transporter, permease protein K02001; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
 
 0.997
CKO_04990
Hypothetical protein; KEGG: pen:PSEEN1053 1.2e-98 dppF; dipeptide ABC transporter, ATP-binding protein; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: Cytoplasmic, score:9.12.
 
 0.985
CKO_04994
Hypothetical protein; KEGG: shn:Shewana3_2650 4.3e-124 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Periplasmic, score:10.00.
 0.983
CKO_01486
Hypothetical protein; KEGG: shn:Shewana3_2650 4.7e-118 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
 0.970
CKO_01522
Hypothetical protein; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
  
 0.895
CKO_04928
Hypothetical protein; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
  
 0.883
CKO_02277
Hypothetical protein; KEGG: rha:RHA1_ro09047 4.3e-06 ABC peptide transporter, permease component K02033; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
  
 0.882
CKO_01322
Hypothetical protein; KEGG: baa:BA_0884 0.00079 binding-protein-dependent transport systems inner membrane component K00294; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
  
 0.871
CKO_01382
Hypothetical protein; KEGG: shn:Shewana3_2650 2.2e-120 acetate kinase K00925; COG: COG4166 ABC-type oligopeptide transport system, periplasmic component; Psort location: Periplasmic, score:10.00.
 
 0.857
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.