close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_05083Hypothetical protein; KEGG: eca:ECA0160 1.8e-86 waaQ, rfaQ; lipopolysaccharide core biosynthesis glycosyl transferase rfaq K02849; COG: COG0859 ADP-heptose:LPS heptosyltransferase. (351 aa)    
Predicted Functional Partners:
CKO_05080
Hypothetical protein; KEGG: sbo:SBO_3626 3.3e-140 rfaC; heptosyl transferase I K02841; COG: COG0859 ADP-heptose:LPS heptosyltransferase.
 
 
 0.996
CKO_05079
Hypothetical protein; KEGG: ecp:ECP_3720 3.3e-181 ADP-heptose-LPS heptosyltransferase II K02843; COG: COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.989
CKO_05081
Hypothetical protein; KEGG: ecj:JW3597 8.2e-50 rfaL; O-antigen ligase K02847; COG: COG3307 Lipid A core - O-antigen ligase and related enzymes; Psort location: CytoplasmicMembrane, score:10.00.
  
 
 0.983
CKO_05090
Hypothetical protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.963
CKO_05089
Hypothetical protein; KEGG: ecc:c4455 4.1e-142 rfaG; lipopolysaccharide core biosynthesis protein rfaG K02844; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.96.
 
 
 0.942
CKO_05085
Hypothetical protein; KEGG: eca:ECA0157 2.8e-79 waaJ, rfaJ; lipopolysaccharide 1,2-glucosyltransferase K03279; COG: COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases.
  
 
 0.931
CKO_05087
Hypothetical protein; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
 
 0.931
nuoC
Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
    
 
 0.922
CKO_05086
Hypothetical protein; KEGG: sbo:SBO_3630 2.5e-71 waaJ; lipopolysaccharide 1,2-glucosyltransferase K03279; COG: COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; Psort location: Cytoplasmic, score:8.96.
  
 
 0.919
CKO_05075
Hypothetical protein; KEGG: ssn:SSO_3780 8.9e-21 waaY; lipopolysaccharide core biosynthesis K02850; COG: NOG10262 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
 
 0.913
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.