STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_0873Putative ribose ABC transporter; Identified by match to protein family HMM PF00532. (314 aa)    
Predicted Functional Partners:
AAur_0346
Putative D-ribose ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 0.991
rbsC
Ribose ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 0.990
rbsA
Ribose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.989
rbsC-2
Ribose ABC transporter permease; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 0.982
AAur_0347
D-ribose transport system ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.975
rbsA-2
Ribose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.972
rbsB
D-ribose-binding protein precursor.
  
  
 
0.929
rbsB-2
Identified by match to protein family HMM PF00532.
  
  
 
0.922
AAur_1892
Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.882
AAur_1989
Putative sugar ABC-type transport systems, permease components; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.849
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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