STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1007Putative transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family. (313 aa)    
Predicted Functional Partners:
AAur_1006
Putative translocator protein, LysE family; Identified by match to protein family HMM PF01810.
 
   
 0.960
AAur_3229
Putative cell envelope-related transcriptional attenuator domain protein; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
   
  
 0.661
AAur_3150
Putative transcriptional regulator protein; Identified by match to protein family HMM PF01638.
   
    0.657
AAur_2430
Putative transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.
   
    0.645
AAur_3284
Putative transcriptional regulator, LuxR family domain protein; Identified by match to protein family HMM PF00196.
   
    0.644
AAur_2103
Putative DNA-binding transcriptional regulator; Identified by match to protein family HMM PF01022.
   
    0.642
AAur_2648
Putative Iron dependent repressor; Identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
  
 
 0.600
AAur_1008
Hypothetical protein; Identified by Glimmer2; putative.
       0.590
AAur_2079
Transcriptional regulator, gntR family; Identified by match to protein family HMM PF00392.
   
  
 0.517
AAur_0508
Putative transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
   
    0.510
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.