STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1663Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. (213 aa)    
Predicted Functional Partners:
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
 
  
 0.876
AAur_1662
Putative 2-methylcitrate dehydratase; Identified by match to protein family HMM PF03972.
       0.851
AAur_0623
Transcription regulator, GntR-family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.773
AAur_0050
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.772
AAur_4129
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.770
AAur_0252
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.754
gltA
Citrate synthase; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; Belongs to the citrate synthase family.
  
    0.715
AAur_3916
Transcriptional regulater, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.691
AAur_3073
Putative transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.622
AAur_3323
Putative transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.620
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.