STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_1908Cna protein B-type domain family; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR01451. (892 aa)    
Predicted Functional Partners:
AAur_1909
Putative surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
 
   
0.628
AAur_0263
Putative RNA polymerase sigma (70) factor; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.585
AAur_1289
Putative Protein of unknown function, DUF255; Identified by match to protein family HMM PF03190.
    
 
 0.557
AAur_1911
Putative RNA polymerase sigma factor domain protein; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.553
AAur_1910
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.551
AAur_0759
Putative Sigma-70 region 2 domain protein; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.520
AAur_1433
Identified by match to protein family HMM PF00498; match to protein family HMM PF01580.
  
 
 0.489
AAur_2680
Identified by match to protein family HMM PF00498; match to protein family HMM PF01580.
  
 
 0.489
AAur_3853
Putative conserved repeat domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451.
 
    0.465
AAur_1588
Identified by match to protein family HMM PF01580; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.452
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.