STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_2245Putative uncharacterized degV family protein; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762. (344 aa)    
Predicted Functional Partners:
AAur_2478
Putative dihydroxyacetone kinase family (DAK2 domain); Identified by match to protein family HMM PF02734.
 
 0.961
leuS
leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.855
AAur_2244
Putative comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.
 
     0.736
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
  
    0.699
AAur_2243
Putative ComEC/Rec2-related domain protein; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
       0.665
AAur_1323
Putative integral membrane protein; Identified by match to protein family HMM TIGR01906.
 
    0.442
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
       0.437
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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