STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_2981Putative aminomethyltransferase (Glycine cleavage system Tprotein); Identified by match to protein family HMM PF01571; Belongs to the GcvT family. (354 aa)    
Predicted Functional Partners:
AAur_2980
Putative ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
   
   0.791
AAur_2983
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
 
    0.778
AAur_2216
Putative Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
 
 
 0.721
AAur_2982
Conserved hypothetical protein.
       0.604
AAur_2877
Conserved hypothetical protein.
  
     0.584
AAur_1609
Conserved hypothetical protein.
  
     0.566
cobA-2
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470.
     
 0.556
AAur_2985
Putative integral membrane protein.
       0.539
AAur_2979
Putative transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
       0.516
AAur_0887
Putative DNA polymerase III, delta' subunit.
  
     0.492
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.