STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3003Hypothetical protein; Identified by Glimmer2; putative. (74 aa)    
Predicted Functional Partners:
AAur_3001
Putative MaoC-like domain protein; Identified by match to protein family HMM PF01575.
       0.627
AAur_3002
Conserved hypothetical protein; Belongs to the UPF0336 family.
       0.627
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.623
AAur_3000
Putative major facilitator superfamily (MFS) transporter; Identified by match to protein family HMM PF07690.
       0.598
AAur_3004
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
AAur_3005
Putative citrate lyase beta subunit; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
       0.538
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.