STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3131Putative polysaccharide pyruvyl transferase family protein; Identified by match to protein family HMM PF04230. (565 aa)    
Predicted Functional Partners:
AAur_3132
Putative S-layer domain protein; Identified by match to protein family HMM PF00395; match to protein family HMM PF07676.
       0.778
AAur_4125
Putative glucosyltransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
  
  
 0.617
AAur_3133
Hypothetical protein; Identified by Glimmer2; putative.
       0.556
AAur_3214
Putative S-layer domain protein; Identified by match to protein family HMM PF00395.
 
     0.499
AAur_3248
Glycosyl transferase domain, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.420
AAur_3130
Conserved hypothetical protein.
       0.415
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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