STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_3203FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839. (406 aa)    
Predicted Functional Partners:
AAur_3202
Hypothetical protein; Identified by Glimmer2; putative.
       0.515
AAur_3201
Putative protein of unknown function (DUF1349); Identified by match to protein family HMM PF07081.
 
     0.482
AAur_1349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.477
AAur_3204
Putative transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.470
AAur_1178
Putative transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
     0.455
AAur_2542
Putative transcriptional regulator, MarR family.
  
     0.436
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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