STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAur_4170Putative aminopeptidase I zinc metalloprotease (M18) family protein; Identified by match to protein family HMM PF02127. (435 aa)    
Predicted Functional Partners:
AAur_4171
Putative dioxygenase subfamily protein; Identified by match to protein family HMM PF00775.
       0.672
AAur_4173
Putative signal transduction histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
       0.521
AAur_4172
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
     
 0.517
AAur_4169
Putative GABA permease (4-amino butyrate transport carrier); Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.
       0.434
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
Server load: low (16%) [HD]