Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_0010DsbA oxidoreductase. (222 aa)    
Predicted Functional Partners:
Adeh_0104
Hypothetical protein.
  
     0.701
Adeh_0238
Hypothetical protein.
 
   
 0.658
Adeh_2645
Cellulose biosynthesis (CelD)-like protein.
  
     0.553
Adeh_4270
Hypothetical protein.
  
     0.545
Adeh_1754
Globin like protein.
  
  
 0.543
Adeh_0011
SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
       0.540
Adeh_2472
Hypothetical protein.
  
     0.510
Adeh_4085
Hypothetical protein.
  
     0.500
Adeh_3322
Tetratricopeptide repeat protein.
  
     0.494
Adeh_3197
NADPH-dependent FMN reductase.
  
    0.485
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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