Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_2145Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (221 aa)    
Predicted Functional Partners:
Adeh_2144
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.862
Adeh_1747
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.778
Adeh_0466
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.777
Adeh_3852
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.762
Adeh_2415
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.725
Adeh_2146
Cytochrome c biogenesis protein.
     
 0.598
Adeh_2143
Major facilitator superfamily MFS_1 transporter.
  
    0.522
Adeh_2142
Asparaginase.
       0.519
Adeh_0705
Type III secretion system apparatus protein YscQ/HrcQ.
   
 
 0.433
Adeh_2379
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.423
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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