STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_2201Thioredoxin; Belongs to the thioredoxin family. (109 aa)    
Predicted Functional Partners:
Adeh_3951
Thioredoxin reductase.
 
 0.914
Adeh_2202
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.608
Adeh_2203
Protein of unknown function DUF6, transmembrane.
       0.578
Adeh_0817
Glutamate synthase (NADH) large subunit.
   
 
 0.529
Adeh_2667
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.524
groL1
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.523
hslV
ATP dependent peptidase CodWX, CodW component, Threonine peptidase, MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.523
groL2
Chaperonin Cpn60, GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.523
Adeh_1564
Ferric uptake regulator, Fur family; Belongs to the Fur family.
  
 
 0.510
fur
Ferric uptake regulator, Fur family; Belongs to the Fur family.
  
 
 0.510
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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