Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_2247Hypothetical protein. (214 aa)    
Predicted Functional Partners:
Adeh_2249
Uncharacterized protein UPF0065.
 
  
 0.989
Adeh_2248
Protein of unknown function DUF112, transmembrane.
 
  
 0.987
Adeh_2246
Membrane protein, putative.
       0.727
Adeh_2280
Monoheme cytochrome SoxX (sulfur oxidation).
  
     0.630
Adeh_2281
Diheme cytochrome SoxA (sulfur oxidation).
  
     0.623
Adeh_2283
Sulfur compound chelating protein SoxZ.
  
     0.500
Adeh_2250
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.462
Adeh_2251
Alpha/beta hydrolase fold-1.
       0.445
Adeh_2137
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; TC 3.A.1.4.-.
  
     0.440
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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