STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_2886AMP-dependent synthetase and ligase. (633 aa)    
Predicted Functional Partners:
Adeh_1165
Long-chain-fatty-acid CoA ligase.
 
0.929
Adeh_2978
Hypothetical protein.
     
  0.800
Adeh_4060
Alpha/beta hydrolase fold acetyltransferase.
     
  0.800
Adeh_1437
AMP-dependent synthetase and ligase.
 
 
0.724
Adeh_2359
Long-chain-fatty-acid--CoA ligase.
 
 
0.721
Adeh_0358
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.717
Adeh_0408
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.717
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.705
Adeh_2785
AMP-dependent synthetase and ligase.
  
  
 
0.704
Adeh_0925
AMP-dependent synthetase and ligase.
 
 
0.674
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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