STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_3124RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (334 aa)    
Predicted Functional Partners:
Adeh_3123
Transport-associated protein.
       0.732
Adeh_0230
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.640
Adeh_2553
FHA domain containing protein.
  
    0.531
Adeh_3852
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.495
Adeh_3122
Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.
       0.492
Adeh_3121
Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.
  
    0.484
Adeh_3120
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
       0.483
Adeh_3119
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TC 3.A.1.1.-.
     
 0.476
Adeh_1747
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.464
Adeh_2415
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.432
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.