Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Adeh_0287 | Adeh_3989 | ABC-type Fe3+ transporter, periplasmic ligand binding protein. | Major facilitator superfamily transporter. | 0.547 |
Adeh_0992 | Adeh_3989 | Putative vgr-related protein. | Major facilitator superfamily transporter. | 0.462 |
Adeh_1870 | Adeh_3989 | HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase. | Major facilitator superfamily transporter. | 0.413 |
Adeh_1870 | Adeh_4263 | HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase. | Conserved hypothetical protein. | 0.755 |
Adeh_3988 | Adeh_3989 | ABC transporter, ATPase subunit. | Major facilitator superfamily transporter. | 0.517 |
Adeh_3989 | Adeh_0287 | Major facilitator superfamily transporter. | ABC-type Fe3+ transporter, periplasmic ligand binding protein. | 0.547 |
Adeh_3989 | Adeh_0992 | Major facilitator superfamily transporter. | Putative vgr-related protein. | 0.462 |
Adeh_3989 | Adeh_1870 | Major facilitator superfamily transporter. | HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase. | 0.413 |
Adeh_3989 | Adeh_3988 | Major facilitator superfamily transporter. | ABC transporter, ATPase subunit. | 0.517 |
Adeh_3989 | Adeh_3990 | Major facilitator superfamily transporter. | Hypothetical protein. | 0.492 |
Adeh_3989 | Adeh_4263 | Major facilitator superfamily transporter. | Conserved hypothetical protein. | 0.467 |
Adeh_3990 | Adeh_3989 | Hypothetical protein. | Major facilitator superfamily transporter. | 0.492 |
Adeh_4263 | Adeh_1870 | Conserved hypothetical protein. | HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase. | 0.755 |
Adeh_4263 | Adeh_3989 | Conserved hypothetical protein. | Major facilitator superfamily transporter. | 0.467 |