STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeh_4271RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (209 aa)    
Predicted Functional Partners:
Adeh_4272
Putative transmembrane transcriptional regulator (anti-sigma factor).
       0.773
Adeh_4273
Hypothetical protein.
       0.723
Adeh_3148
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.553
Adeh_4268
ATPase associated with various cellular activities, AAA-3.
       0.488
Adeh_4269
Hypothetical protein.
       0.488
Adeh_4270
Hypothetical protein.
       0.488
Adeh_0705
Type III secretion system apparatus protein YscQ/HrcQ.
   
 
 0.437
Adeh_2144
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.405
Adeh_2379
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.405
Adeh_3149
Hypothetical protein.
  
 
 0.405
Your Current Organism:
Anaeromyxobacter dehalogenans
NCBI taxonomy Id: 290397
Other names: A. dehalogenans 2CP-C, Anaeromyxobacter dehalogenans 2CP-C, Anaeromyxobacter dehalogenans ATCC BAA-259, Anaeromyxobacter dehalogenans str. 2CP-C, Anaeromyxobacter dehalogenans strain 2CP-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.