STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Csal_0010Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase. (489 aa)    
Predicted Functional Partners:
Csal_2031
Hypothetical protein.
  
     0.754
Csal_1209
Transcriptional regulator, XRE family.
  
     0.704
Csal_0673
Hypothetical protein.
  
     0.682
Csal_0240
Polysaccharide deacetylase.
  
     0.632
Csal_0500
Sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.618
Csal_0626
Aspartate kinase; Belongs to the aspartokinase family.
      
 0.618
glk
Glucokinase; Belongs to the bacterial glucokinase family.
      
 0.618
Csal_1140
Aldehyde dehydrogenase.
      
 0.618
Csal_1144
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
      
 0.618
betA1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
      
 0.618
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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