STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_1237Protein of unknown function DUF59. (187 aa)    
Predicted Functional Partners:
Csal_1234
Iron-regulated ABC transporter ATPase subunit SufC.
 
  
 0.962
Csal_1235
Iron-regulated ABC transporter permease protein SufD.
 
   
 0.955
Csal_1236
Cysteine desulfurase / L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.935
Csal_1233
Iron-regulated ABC transporter membrane component SufB.
 
   
 0.914
Csal_1238
Protein of unknown function DUF218.
       0.713
Csal_1232
Transcriptional regulator, BadM/Rrf2 family.
 
     0.625
Csal_2393
3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
  
 0.622
Csal_0337
Vanillate demethylase subunit B.
  
  
 0.563
Csal_0343
Ferredoxin.
  
  
 0.563
Csal_1005
Oxidoreductase FAD-binding protein.
  
  
 0.563
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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