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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_1908Excisionase/Xis, DNA-binding protein. (307 aa)    
Predicted Functional Partners:
fdhD
Formate dehydrogenase, subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.958
Csal_1911
Conserved hypothetical protein.
 
     0.912
Csal_1912
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
    0.862
Csal_1913
Cytoplasmic chaperone TorD.
 
    0.858
Csal_2083
Binding-protein-dependent transport systems inner membrane component.
 
    0.836
Csal_1917
Formate dehydrogenase gamma subunit.
 
     0.833
Csal_2084
Molybdate-binding protein.
 
     0.828
Csal_1915
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.823
Csal_1916
Formate dehydrogenase beta subunit.
 
     0.817
Csal_2086
Periplasmic sensor signal transduction histidine kinase.
  
     0.755
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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