Csal_1981 protein (Chromohalobacter salexigens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Csal_1981

FlgN. (150 aa)

Predicted Functional Partners:

flgK

0.993

Csal_1980

0.991

Csal_1968

0.984

Csal_1979

0.984

Csal_1961

0.960

Csal_2032

0.959

Csal_1978

0.957

Csal_1970

0.954

Csal_1960

0.949

Csal_1964

0.939

Your Current Organism:

Chromohalobacter salexigens

NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csal_1960	Csal_1961	Csal_1960	Csal_1961	Flagellar hook-length control protein.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.986
Csal_1960	Csal_1964	Csal_1960	Csal_1964	Flagellar hook-length control protein.	Flagellar biosynthesis protein, FliO.	0.991
Csal_1960	Csal_1968	Csal_1960	Csal_1968	Flagellar hook-length control protein.	Flagellin-like protein.	0.932
Csal_1960	Csal_1970	Csal_1960	Csal_1970	Flagellar hook-length control protein.	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.	0.992
Csal_1960	Csal_1978	Csal_1960	Csal_1978	Flagellar hook-length control protein.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.980
Csal_1960	Csal_1979	Csal_1960	Csal_1979	Flagellar hook-length control protein.	Flagellar protein FlgA.	0.946
Csal_1960	Csal_1980	Csal_1960	Csal_1980	Flagellar hook-length control protein.	Anti-sigma-28 factor, FlgM.	0.796
Csal_1960	Csal_1981	Csal_1960	Csal_1981	Flagellar hook-length control protein.	FlgN.	0.949
Csal_1960	Csal_2032	Csal_1960	Csal_2032	Flagellar hook-length control protein.	Flagellar protein FliS.	0.971
Csal_1960	flgK	Csal_1960	Csal_1969	Flagellar hook-length control protein.	Flagellar hook-associated protein.	0.982
Csal_1961	Csal_1960	Csal_1961	Csal_1960	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar hook-length control protein.	0.986
Csal_1961	Csal_1964	Csal_1961	Csal_1964	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar biosynthesis protein, FliO.	0.994
Csal_1961	Csal_1968	Csal_1961	Csal_1968	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellin-like protein.	0.928
Csal_1961	Csal_1970	Csal_1961	Csal_1970	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.	0.988
Csal_1961	Csal_1978	Csal_1961	Csal_1978	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.974
Csal_1961	Csal_1979	Csal_1961	Csal_1979	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar protein FlgA.	0.976
Csal_1961	Csal_1980	Csal_1961	Csal_1980	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Anti-sigma-28 factor, FlgM.	0.966
Csal_1961	Csal_1981	Csal_1961	Csal_1981	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	FlgN.	0.960
Csal_1961	Csal_2032	Csal_1961	Csal_2032	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar protein FliS.	0.952
Csal_1961	flgK	Csal_1961	Csal_1969	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar hook-associated protein.	0.976