Csal_1981 protein (Chromohalobacter salexigens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Csal_1981

FlgN. (150 aa)

Predicted Functional Partners:

Csal_1980

0.993

flgK

0.987

Csal_1979

0.974

Csal_1968

0.970

Csal_1970

0.950

Csal_1961

0.948

Csal_2032

0.930

Csal_1960

0.928

Csal_1964

0.927

Csal_1976

0.924

Your Current Organism:

Chromohalobacter salexigens

NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csal_1960	Csal_1961	Csal_1960	Csal_1961	Flagellar hook-length control protein.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.990
Csal_1960	Csal_1964	Csal_1960	Csal_1964	Flagellar hook-length control protein.	Flagellar biosynthesis protein, FliO.	0.984
Csal_1960	Csal_1968	Csal_1960	Csal_1968	Flagellar hook-length control protein.	Flagellin-like protein.	0.923
Csal_1960	Csal_1970	Csal_1960	Csal_1970	Flagellar hook-length control protein.	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.	0.989
Csal_1960	Csal_1976	Csal_1960	Csal_1976	Flagellar hook-length control protein.	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	0.981
Csal_1960	Csal_1979	Csal_1960	Csal_1979	Flagellar hook-length control protein.	Flagellar protein FlgA.	0.930
Csal_1960	Csal_1980	Csal_1960	Csal_1980	Flagellar hook-length control protein.	Anti-sigma-28 factor, FlgM.	0.832
Csal_1960	Csal_1981	Csal_1960	Csal_1981	Flagellar hook-length control protein.	FlgN.	0.928
Csal_1960	Csal_2032	Csal_1960	Csal_2032	Flagellar hook-length control protein.	Flagellar protein FliS.	0.949
Csal_1960	flgK	Csal_1960	Csal_1969	Flagellar hook-length control protein.	Flagellar hook-associated protein.	0.973
Csal_1961	Csal_1960	Csal_1961	Csal_1960	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar hook-length control protein.	0.990
Csal_1961	Csal_1964	Csal_1961	Csal_1964	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar biosynthesis protein, FliO.	0.995
Csal_1961	Csal_1968	Csal_1961	Csal_1968	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellin-like protein.	0.924
Csal_1961	Csal_1970	Csal_1961	Csal_1970	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.	0.985
Csal_1961	Csal_1976	Csal_1961	Csal_1976	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.	0.980
Csal_1961	Csal_1979	Csal_1961	Csal_1979	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar protein FlgA.	0.978
Csal_1961	Csal_1980	Csal_1961	Csal_1980	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Anti-sigma-28 factor, FlgM.	0.967
Csal_1961	Csal_1981	Csal_1961	Csal_1981	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	FlgN.	0.948
Csal_1961	Csal_2032	Csal_1961	Csal_2032	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar protein FliS.	0.949
Csal_1961	flgK	Csal_1961	Csal_1969	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar hook-associated protein.	0.980