Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Csal_1997Transcriptional regulator, GntR family. (226 aa)    
Predicted Functional Partners:
Csal_1996
Conserved hypothetical protein.
 
   
 0.799
Csal_1076
Transcriptional regulator, GntR family.
  
     0.754
Csal_0776
Transcriptional regulator, GntR family.
  
     0.730
Csal_1995
FAD dependent oxidoreductase.
 
  
 0.699
Csal_0069
Transcriptional regulator, GntR family.
  
     0.662
Csal_0403
Transcriptional regulator, GntR family.
  
    0.616
Csal_0365
Transcriptional regulator, GntR family.
  
    0.565
Csal_0753
Transcriptional regulator, GntR family.
  
    0.522
Csal_2616
Transcriptional regulator, GntR family.
  
    0.520
Csal_3177
Transcriptional regulator, GntR family.
  
    0.487
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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