STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_2000Cytochrome bd quinol oxidase subunit 2 apoprotein. (333 aa)    
Predicted Functional Partners:
Csal_2001
Cytochrome bd quinol oxidase subunit 1 apoprotein.
 0.999
Csal_1999
ABC transporter related protein.
 
  
 0.988
Csal_1998
ABC transporter related protein.
 
  
 0.981
Csal_0957
Cytochrome bo3 quinol oxidase subunit 4.
     
 0.838
nuoC
NADH dehydrogenase subunit C / NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.791
Csal_2959
Thioredoxin reductase.
      
 0.713
Csal_0996
NAD-dependent formate dehydrogenase flavoprotein subunit.
     
 0.700
Csal_0954
Cytochrome bo3 quinol oxidase subunit 2.
     
 0.694
Csal_0130
Rieske (2Fe-2S) protein.
  
  
 0.681
Csal_1313
Cytochrome B561.
  
   
 0.674
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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