STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_2149Conserved hypothetical protein. (388 aa)    
Predicted Functional Partners:
Csal_0257
Porin, LamB type.
  
     0.612
Csal_1444
Conserved hypothetical protein.
  
     0.602
Csal_0690
lipid-A kinase.
  
     0.590
Csal_0655
Putative membrane protein.
  
     0.573
Csal_2798
Conserved hypothetical protein.
  
     0.556
Csal_1288
Acyltransferase 3.
  
     0.537
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.470
Csal_1886
Phage integrase; Belongs to the 'phage' integrase family.
  
     0.465
Csal_2144
SEC-C motif protein.
 
     0.465
Csal_2148
Hypothetical protein.
       0.464
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.