STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csal_2425Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (356 aa)    
Predicted Functional Partners:
Csal_2426
ABC transporter related protein.
 
 
 0.969
Csal_3091
ABC transporter related protein.
 
 
 0.868
Csal_1051
ABC transporter related protein.
 
 
 0.866
Csal_2702
ABC transporter related protein.
 
 
 0.861
Csal_3089
Periplasmic binding protein.
 
 
 0.854
Csal_1492
Periplasmic binding protein.
 
 
 0.850
Csal_1050
Periplasmic binding protein.
 
 
 0.655
Csal_1043
Periplasmic binding protein.
 
 
 0.603
Csal_2549
ABC transporter related protein.
 
 
 0.597
Csal_2424
Aminodeoxychorismate synthase, subunit I.
       0.590
Your Current Organism:
Chromohalobacter salexigens
NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.