Csal_3000 protein (Chromohalobacter salexigens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Csal_3000

Binding-protein-dependent transport systems inner membrane component. (308 aa)

Predicted Functional Partners:

Csal_3001

0.999

Csal_2999

0.997

Csal_3002

0.996

Csal_0210

0.927

Csal_1871

0.912

Csal_0214

0.908

Csal_1870

0.902

Csal_0212

0.900

Csal_1869

0.896

Csal_3003

0.773

Your Current Organism:

Chromohalobacter salexigens

NCBI taxonomy Id: 290398
Other names: C. salexigens DSM 3043, Chromohalobacter salexigens 1H11, Chromohalobacter salexigens DSM 3043

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Csal_0210	Csal_0212	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein, family 5.	0.997
Csal_0210	Csal_0214	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.999
Csal_0210	Csal_1869	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.	0.995
Csal_0210	Csal_1870	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.	0.998
Csal_0210	Csal_1871	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.912
Csal_0210	Csal_2999	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein, family 5.	0.809
Csal_0210	Csal_3000	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.927
Csal_0210	Csal_3002	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.937
Csal_0212	Csal_0210	Extracellular solute-binding protein, family 5.	Binding-protein-dependent transport systems inner membrane component.	0.997
Csal_0212	Csal_0214	Extracellular solute-binding protein, family 5.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.993
Csal_0212	Csal_1869	Extracellular solute-binding protein, family 5.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.	0.974
Csal_0212	Csal_1870	Extracellular solute-binding protein, family 5.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.	0.976
Csal_0212	Csal_1871	Extracellular solute-binding protein, family 5.	Binding-protein-dependent transport systems inner membrane component.	0.984
Csal_0212	Csal_2999	Extracellular solute-binding protein, family 5.	Extracellular solute-binding protein, family 5.	0.562
Csal_0212	Csal_3000	Extracellular solute-binding protein, family 5.	Binding-protein-dependent transport systems inner membrane component.	0.900
Csal_0212	Csal_3001	Extracellular solute-binding protein, family 5.	Binding-protein-dependent transport systems inner membrane component.	0.926
Csal_0212	Csal_3002	Extracellular solute-binding protein, family 5.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.427
Csal_0214	Csal_0210	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.999
Csal_0214	Csal_0212	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein, family 5.	0.993
Csal_0214	Csal_1869	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.	0.969