STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_0232KEGG: ret:RHE_PB00156 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Arth_0233
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV6389 aldehyde dehydrogenase.
 
  
 0.904
Arth_0234
L-fuconate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: sma:SAV7282 mandelate racemase.
 
   
 0.829
Arth_0036
PFAM: aldehyde dehydrogenase; KEGG: cgb:cg0535 probable ketoglutarate semialdehyde dehydrogenase.
 
  
 0.619
Arth_3335
PFAM: aldehyde dehydrogenase; KEGG: sco:SCO1871 aldehyde dehydrogenase.
 
  
 0.583
Arth_0235
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sme:SMa0267 putative GntR-family regulator.
     
 0.496
Arth_0037
PFAM: dihydrodipicolinate synthetase; KEGG: cgb:cg0536 putative 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.431
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.