STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_0366TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa28660 putative short chain dehydrogenase. (249 aa)    
Predicted Functional Partners:
Arth_0490
butyryl-CoA:acetate CoA transferase; KEGG: cef:CE1269 putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
 0.914
Arth_1389
butyryl-CoA:acetate CoA transferase; KEGG: mbo:Mb2531c probable succinyl-CoA:3-ketoacid-coenzyme A transferase (beta subunit) ScoB (3-oxo-acid:CoA transferase) (OxcT B) (succinyl CoA:3-oxoacid CoA-transferase); TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
 0.914
Arth_0491
KEGG: rpb:RPB_1458 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.907
Arth_1388
3-oxoacid CoA-transferase, A subunit; KEGG: mbo:Mb2532c probable succinyl-CoA:3-ketoacid-coenzyme A transferase (alpha subunit) ScoA (3-oxo acid:CoA transferase) (OXCT A) (succinyl-CoA:3-oxoacid-coenzyme A transferase); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.907
Arth_0364
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nfa:nfa28680 putative transcriptional regulator.
 
     0.672
Arth_0365
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: nfa:nfa28670 putative transporter.
 
     0.659
Arth_1654
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit.
  
 0.475
Arth_1321
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nfa:nfa28680 putative transcriptional regulator.
 
     0.441
Arth_2466
KEGG: sma:SAV5788 putative malonyl-CoA:acyl carrier protein malonyltransferase.
 
 
 0.438
Arth_3255
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; MaoC domain protein dehydratase; KEGG: cef:CE0677 putative dehydrogenase.
  
 0.432
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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