STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_0803PFAM: glycoside hydrolase, family 38; glycosyl hydrolases 38 domain protein; KEGG: sma:SAV7277 putative alpha-mannosidase. (1008 aa)    
Predicted Functional Partners:
Arth_2378
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5430 putative extracellular solute-binding lipoprotein; TC 3.A.1.1.-.
 
     0.572
Arth_0299
TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: nfa:nfa28540 putative PTS fructose-specific enzyme IIABC.
  
  
 0.559
Arth_1161
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: sco:SCO3136 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
   
    0.512
Arth_0800
KEGG: sco:SCO3828 molybdopterin-guanine dinucleotide biosynthesis protein.
 
     0.511
cmk
KEGG: lxx:Lxx05730 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
  
    0.496
Arth_4128
PFAM: peptidase M18, aminopeptidase I; KEGG: pac:PPA0574 aspartyl aminopeptidase.
   
 
 0.495
Arth_2037
KEGG: mbo:Mb0378c hypothetical protein.
   
    0.484
Arth_3415
Molybdenum cofactor cytidylyltransferase; KEGG: sma:SAV1999 hypothetical protein.
   
    0.484
Arth_3917
PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: sma:SAV2095 putative beta-galactosidase.
 
   
 0.484
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
       0.475
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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