Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Arth_0946PFAM: protein of unknown function DUF1295; KEGG: eli:ELI_11450 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Arth_0943
KEGG: eli:ELI_05565 hypothetical protein.
 
     0.827
Arth_2362
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mbo:Mb0457c hypothetical protein.
     0.668
Arth_2361
PFAM: protein of unknown function DUF1365; KEGG: mtc:MT0464 hypothetical protein.
 
     0.625
Arth_2326
KEGG: atc:AGR_C_3604 hypothetical protein.
 
     0.575
Arth_0944
PFAM: AMP-dependent synthetase and ligase; KEGG: lxx:Lxx15440 long-chain-fatty-acid-CoA ligase.
       0.567
Arth_2360
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mtc:MT0463 cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.545
Arth_0941
Hypothetical protein.
       0.540
Arth_0942
KEGG: sco:SCO0316 DNA-binding protein.
       0.540
Arth_0945
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: bld:BLi02175 YcgE.
       0.540
Arth_0940
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_CH01075 hypothetical protein.
       0.432
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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