STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1108Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (402 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.975
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.933
Arth_1744
KEGG: sma:SAV6507 putative L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.
  
 
 0.914
Arth_4012
KEGG: sco:SCO1773 putative L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.
  
 
 0.914
Arth_2896
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 
0.909
Arth_2838
PFAM: aminotransferase, class I and II; KEGG: psb:Psyr_3615 aminotransferase, class I and II.
    
 0.819
Arth_3596
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: afu:AF1665 ornithine cyclodeaminase.
     
 0.819
Arth_3795
L-alanine aminotransferase apoenzyme; PFAM: aminotransferase, class I and II; KEGG: pfl:PFL_4247 aminotransferase, classes I and II.
    
 0.819
Arth_1107
PFAM: purine catabolism PurC domain protein; KEGG: tfu:Tfu_0057 putative regulatory protein.
       0.774
Arth_2895
PFAM: protein of unknown function UPF0079; KEGG: lxx:Lxx19940 hypothetical protein.
  
 0.760
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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