STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1232PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_0166 similar to glycosyltransferase probably involved in cell wall biogenesis. (481 aa)    
Predicted Functional Partners:
Arth_1231
PFAM: polysaccharide deacetylase; KEGG: sma:SAV3292 hypothetical protein.
 
  
 0.948
Arth_1230
PFAM: polysaccharide deacetylase; KEGG: sma:SAV3292 hypothetical protein.
 
  
 0.910
Arth_1233
KEGG: pol:Bpro_1435 hypothetical protein.
 
     0.746
Arth_1228
KEGG: ddi:DDB0202083 hypothetical protein.
 
     0.740
Arth_1227
Polysaccharide deacetylase; PFAM: S-layer domain protein domain protein; polysaccharide deacetylase; KEGG: sma:SAV3292 hypothetical protein.
 
  
 0.736
Arth_1226
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tfu:Tfu_0169 nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase).
 
 
 0.683
Arth_1513
KEGG: lxx:Lxx01410 hypothetical protein.
  
 
 0.599
Arth_1651
Signal transduction histidine kinase, LytS; KEGG: cgb:cg3135 hypothetical protein.
  
 
 0.599
Arth_0537
Hypothetical protein.
  
 
 0.575
Arth_0341
PFAM: polysaccharide deacetylase; KEGG: chy:CHY_1591 polysaccharide deacetylase family protein.
 
  
 0.541
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.