STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1908PFAM: ROK family protein; KEGG: lxx:Lxx03030 transcriptional regulator, ROK family. (391 aa)    
Predicted Functional Partners:
Arth_1892
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: lpl:lp_3133 beta-glucosides PTS, EIIBCA; TC 4.A.1.2.11; TC 4.A.1.2.11; TC 4.A.1.2.11.
  
 
 0.869
Arth_1909
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO6571 DNA-binding protein.
 
     0.837
Arth_1691
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: lxx:Lxx11320 glutamate synthase, alpha subunit.
  
  
 0.733
Arth_1910
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: yps:YPTB2481 hypothetical protein.
       0.694
Arth_1907
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: ret:RHE_PE00361 probable transcriptional regulator protein, AraC family.
 
  
 0.645
Arth_1913
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding; KEGG: msu:MS1528 MviM protein.
 
   
 0.590
Arth_1911
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bha:BH0710 hypothetical protein.
     
 0.547
Arth_1715
PFAM: ROK family protein; KEGG: sco:SCO1171 xylose repressor.
  
     0.529
Arth_3514
PTS system N-acetylglucosamine-specific IIC component, Glc family; PFAM: phosphotransferase system, EIIC; KEGG: sma:SAV5167 putative PTS transmembrane component; TC 4.A.1.1.5.
  
 
 0.522
Arth_3515
PTS system N-acetylglucosamine-specific IIB component, Glc family; PFAM: phosphotransferase system PTS, EIIB protein; KEGG: sma:SAV5169 phosphotransferase system IIB component; TC 4.A.1.1.5.
  
 
 0.522
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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