STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1986KEGG: cef:CE1105 putative magnesium chelatase. (469 aa)    
Predicted Functional Partners:
Arth_1987
SMART: von Willebrand factor, type A; KEGG: cef:CE1104 hypothetical protein.
 
    0.958
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
 
 0.933
Arth_2771
TIGRFAM: protoporphyrinogen oxidase; PFAM: FAD dependent oxidoreductase; KEGG: lxx:Lxx01060 protoporphyrinogen oxidase.
  
 
 0.923
Arth_1632
Flavodoxin-like protein; KEGG: tfu:Tfu_3023 similar to flavodoxin.
     
  0.900
Arth_3245
Flavodoxin-like protein; KEGG: tfu:Tfu_3023 similar to flavodoxin.
     
  0.900
Arth_3601
KEGG: rba:RB4887 protoporphyrinogen oxidase.
     
  0.900
Arth_2930
KEGG: plt:Plut_0797 hypothetical protein.
  
 
 0.890
Arth_1985
KEGG: tbd:Tbd_1061 putative diguanylate phosphodiesterase (EAL domain) with GAF sensor; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.508
Arth_1988
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: tth:TTC1215 putative transcriptional regulator, GntR family protein.
       0.496
Arth_1989
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1709 integral membrane transport protein.
       0.496
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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