STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_1998PFAM: ferredoxin; KEGG: cef:CE0558 putative rhodocoxin. (106 aa)    
Predicted Functional Partners:
Arth_2000
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cef:CE0556 hypothetical protein.
 
    0.972
Arth_3659
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sat:SYN_02139 NADH-quinone oxidoreductase chain F.
  
 
 0.968
Arth_1999
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cef:CE0557 putative rubredoxin reductase.
 
  
 0.965
Arth_1994
PFAM: cytochrome P450; KEGG: cgb:cg0645 cytochrome P450.
 
 0.949
Arth_1996
PFAM: PEP-utilising enzyme, mobile region; KEGG: cef:CE0560 putative phosphoenolpyruvate synthase.
 
    0.858
Arth_1727
PFAM: cytochrome P450; KEGG: bja:blr1048 probable cytochrome P450.
 
 0.856
Arth_1978
PFAM: cytochrome P450; KEGG: bld:BLi00706 similar to monooxygenase; RBL03740.
 
 0.830
Arth_1997
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: cgb:cg0641 probable short-chain dehydrogenase, secreted.
 
 
 0.821
Arth_2952
Cytochrome P450-like protein; KEGG: mpa:MAP0344c putative cytochrome p450.
  
 0.782
Arth_1236
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lxx:Lxx09480 NifU homolog.
  
 0.772
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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