STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2002PFAM: acyltransferase 3; KEGG: dsy:DSY1105 hypothetical protein. (382 aa)    
Predicted Functional Partners:
Arth_2881
Acyltransferase 3; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: acyltransferase 3; KEGG: nfa:nfa49230 putative acyltransferase.
  
     0.755
Arth_2880
PFAM: acyltransferase 3; KEGG: nfa:nfa49230 putative acyltransferase.
  
     0.752
Arth_2000
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cef:CE0556 hypothetical protein.
       0.497
Arth_2001
PFAM: aldehyde dehydrogenase; KEGG: cef:CE0555 putative aldehyde dehydrogenase.
       0.497
Arth_0890
KEGG: mpa:MAP2533 hypothetical protein.
  
    0.468
Arth_1998
PFAM: ferredoxin; KEGG: cef:CE0558 putative rhodocoxin.
       0.439
Arth_1999
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cef:CE0557 putative rubredoxin reductase.
       0.439
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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