STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2005PFAM: GatB/Yqey domain protein; KEGG: mpa:MAP0363 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Arth_2004
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: sco:SCO1622 putative 5'-3' exonuclease.
       0.608
rpmE2
PFAM: ribosomal protein L31; KEGG: lxx:Lxx11800 50S ribosomal protein L31.
  
    0.566
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
    0.544
Arth_2006
PFAM: major facilitator superfamily MFS_1; KEGG: hma:rrnAC1907 putative sugar transporter.
       0.510
Arth_2003
PFAM: GCN5-related N-acetyltransferase; KEGG: dra:DR2355 acetyltransferase, putative.
       0.490
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: lxx:Lxx09790 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.428
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.401
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.