STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2014Transporter, UIT1 family; PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ret:RHE_CH00922 dicarboxylate-carrier protein; TC 9.B.48. (468 aa)    
Predicted Functional Partners:
Arth_2012
PFAM: carboxyl transferase; KEGG: mpa:MAP0839c acetyl-CoA carboxylase carboxyl transferase.
     
 0.807
Arth_2015
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO2442 GntR-family transcriptional regulator.
 
    0.784
Arth_2013
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mag:amb1653 predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
     0.668
Arth_3873
PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: nfa:nfa52900 putative cation antiporter NADH dehydrogenase subunit; TC 2.A.63.1; TC 2.A.63.1.
  
  
 0.498
Arth_2019
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: bsu:BG12277 similar to unknown proteins.
 
    0.447
Arth_1892
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: lpl:lp_3133 beta-glucosides PTS, EIIBCA; TC 4.A.1.2.11; TC 4.A.1.2.11; TC 4.A.1.2.11.
  
  
 0.444
Arth_3240
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.411
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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