STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2192PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: lxx:Lxx08400 acylaminoacyl-peptidase. (701 aa)    
Predicted Functional Partners:
Arth_2827
PFAM: extracellular solute-binding protein, family 5; KEGG: lxx:Lxx16400 dipeptide porter.
 
     0.663
Arth_2815
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR.
  
     0.588
Arth_2191
23S rRNA m(1)G-748 methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_2162 methyltransferase.
       0.578
Arth_1892
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: lpl:lp_3133 beta-glucosides PTS, EIIBCA; TC 4.A.1.2.11; TC 4.A.1.2.11; TC 4.A.1.2.11.
    
 
 0.548
Arth_2826
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx16390 ABC transporter, permease protein.
 
     0.527
Arth_3516
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: pac:PPA0679 putative PTS system component IIA; TC 4.A.1.1.5.
    
 
 0.527
Arth_2824
KEGG: lxx:Lxx16370 integral membrane protein.
  
     0.436
Arth_2190
PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 putative integral membrane protein.
       0.420
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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