Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Arth_2279KEGG: fra:Francci3_3215 putative secreted protein. (76 aa)    
Predicted Functional Partners:
Arth_2280
KEGG: lxx:Lxx10890 secreted protein.
 
     0.885
Arth_0105
PFAM: RelA/SpoT domain protein; KEGG: cdi:DIP1575 hypothetical protein.
  
     0.714
Arth_0009
PFAM: protein of unknown function DUF6, transmembrane; KEGG: sru:SRU_1674 integral membrane protein DUF6.
  
     0.641
Arth_0811
Hypothetical protein.
  
     0.595
Arth_2284
Hypothetical protein.
 
     0.594
Arth_1176
Hypothetical protein.
  
     0.563
Arth_2808
Hypothetical protein.
  
     0.557
Arth_2277
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.551
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.551
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
       0.535
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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