STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2425PFAM: oxidoreductase domain protein; KEGG: nfa:nfa27540 putative oxidoreductase. (389 aa)    
Predicted Functional Partners:
Arth_2423
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: nfa:nfa27520 hypothetical protein.
 
    0.953
Arth_2424
PFAM: protein of unknown function DUF993; KEGG: nfa:nfa27530 hypothetical protein.
 
     0.948
Arth_3331
PFAM: oxidoreductase domain protein; KEGG: tfu:Tfu_1707 putative oxidoreductase.
  
     0.633
Arth_3318
PFAM: oxidoreductase domain protein; KEGG: sma:SAV6370 oxidoreductase.
  
     0.625
Arth_2426
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: nfa:nfa27550 putative transcriptional regulator.
 
     0.614
Arth_1703
KEGG: sco:SCO0664 hypothetical protein.
  
     0.594
Arth_3339
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: tfu:Tfu_1705 putative oxidoreductase.
  
     0.572
Arth_2427
KEGG: rba:RB10144 endo-1,4-beta-xylanase B.
  
  
 0.535
Arth_3324
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_1702 sugar-binding protein; TC 3.A.1.1.-.
 
     0.530
Arth_0780
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_1702 sugar-binding protein; TC 3.A.1.1.-.
 
     0.484
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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