STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2452PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV6627 putative 2-oxo-3-deoxygluconate oxidoreductase. (256 aa)    
Predicted Functional Partners:
Arth_2451
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO1682 L-idonate 5-dehydrogenase.
 
 
  0.946
Arth_2453
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sma:SAV2025 putative dehydrogenase.
  
  
 0.787
Arth_2454
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: oih:OB0844 dehydrogenase.
 
 
 
 0.676
Arth_3528
Gluconate kinase, SKI family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: dra:DR1910 thermoresistant gluconokinase.
    
 0.532
Arth_2466
KEGG: sma:SAV5788 putative malonyl-CoA:acyl carrier protein malonyltransferase.
 
 
 0.525
Arth_1724
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7199 3-alpha-hydroxysteroid dehydrogenase.
  
     0.498
Arth_3917
PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: sma:SAV2095 putative beta-galactosidase.
  
  
 0.441
Arth_0304
3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: beta-ketoacyl synthase; KEGG: fra:Francci3_2596 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.429
Arth_2469
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.429
Arth_0333
PFAM: O-methyltransferase, family 3; KEGG: mlo:mlr0279 O-methyltransferase.
 
 
 0.422
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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