STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_2505PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: nfa:nfa34340 putative short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (220 aa)    
Predicted Functional Partners:
Arth_2506
Hypothetical protein.
 
     0.933
Arth_2507
Succinyldiaminopimelate aminotransferase apoenzyme; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: sma:SAV4517 putative aminotransferase.
       0.774
Arth_2508
KEGG: lxx:Lxx20650 hypothetical protein.
       0.774
Arth_1790
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: hma:pNG7030 3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.712
Arth_2286
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Insect alcohol dehydrogenase family; KEGG: bur:Bcep18194_B1464 short-chain dehydrogenase/reductase SDR.
 
 
 0.711
Arth_1787
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rba:RB2242 oxidoreductase, short-chain dehydrogenase/reductase family.
 
     0.691
Arth_2352
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_0413 oxidoreductase, short-chain dehydrogenase/reductase family.
  
     0.690
Arth_0841
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: nfa:nfa32290 putative short chain dehydrogenase.
 
 
 0.680
Arth_0887
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: nfa:nfa32290 putative short chain dehydrogenase.
 
 
 0.655
Arth_2119
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: lxx:Lxx11740 3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.636
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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