STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arth_3834PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_3084 conserved hypothetical membrane permease protein. (252 aa)    
Predicted Functional Partners:
Arth_3833
PFAM: Rhodanese domain protein; KEGG: cef:CE0055 hypothetical protein.
 
  
 0.952
Arth_3839
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: cef:CE0319 hypothetical protein.
 
  
 0.822
Arth_3832
PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein.
 
   
 0.790
Arth_0108
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: sco:SCO0618 hypothetical protein.
 
  
 0.773
Arth_3835
PFAM: Rhodanese domain protein; KEGG: rso:RSc0354 probable transmembrane protein.
 
  
 0.697
Arth_3836
PFAM: Rhodanese domain protein; KEGG: cef:CE0054 hypothetical protein.
 
  
 0.656
Arth_0270
PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein.
 
   
 0.579
Arth_3831
PFAM: protein of unknown function DUF302; KEGG: cef:CE0058 hypothetical protein.
 
     0.527
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: lxx:Lxx05990 phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.491
Arth_3837
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin; Belongs to the thioredoxin family.
  
    0.464
Your Current Organism:
Arthrobacter sp. FB24
NCBI taxonomy Id: 290399
Other names: A. sp. FB24
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