Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Jann_16633-oxoadipate enol-lactonase. (263 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase.
 
 0.996
Jann_1592
Carboxymuconolactone decarboxylase.
  
 0.948
Jann_2938
3-oxoadipate enol-lactonase.
  
  
 
0.919
Jann_1188
Carboxymuconolactone decarboxylase.
 
  
 0.918
Jann_1189
Carboxymuconolactone decarboxylase.
    
 0.903
Jann_2958
Carboxymuconolactone decarboxylase.
   
 
 0.901
Jann_4165
Hypothetical protein.
    
  0.900
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.898
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit.
 
   
 0.727
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
   
 0.693
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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